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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002380
species: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCTTCCTCTTCCTCTTGGG

miRNA*
ATAGAGGAGGAGGAGGAGCAG

mismatches: 4
bulges: 0

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pre-miRNA
ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTC
TTCCTCTTGGG
GCTGACCAC


dot-bracket secondary structure
.....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........)))))))))
)))))))...)
).)))....



SIMILARITIES
miRBase mtr-MIR2673a: 0.000006

PMRD no hits

microPC no hits
UniProt no hits

RFAM 7SK: 0.0004
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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